Install anaconda windows subsystem for linux install#
If you want NEURON inside your WSL environment, you can probably just do "sudo pip3 install neuron" inside the Ubuntu for Windows (it works in regular Ubuntu). (This is the combination I use with Windows.) If you're using that, everything should just work with the Windows installer for NEURON 7.7.2. The default install of Anaconda gives you Python 3.7. :)īMTK supports all the way back to NEURON 7.4 which is almost 5 years old, and any guidance you're seeing about issues with NEURON and Anaconda (which we now explicitly suggest using in the NEURON quickstart guide) pertains to old versions of NEURON. Simple work-around: don't compile NEURON yourself.
Any help would be greatly appreciated and of course I am ready to provide more information if requested. If I then try to run the setup.py command I get this:Įrror: package directory '/usr/local/nrn/share/nrn/lib/python/neuron' does not exist Make: Leaving directory '/home/jpduf/nrn' Make: Leaving directory '/home/jpduf/nrn/src' Make: Leaving directory '/home/jpduf/nrn/src/nrniv' pile_linux), I get the following errors during make -j and make install -j commands during the NEURON setup (setting up InterViews seems to work fine)Ĭollect2: error: ld returned 1 exit status When following the instructions to compile NEURON (. I am trying to compile NEURON as suggested on the BMTK website as they advise precompiled versions might cause errors if used with anaconda. I am pretty new to linux and I installed Ubuntu on Windows subsystem for linux. I have previously used NEURON on Windows successfully. I'm trying to install NEURON on Windows subsystem for linux in order to use the brain modelling toolkit (BMTK).
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